Publications

Doroudgar S; Hofmann C; Boileau E; Malone B; Riechert E; Gorska AA; Jakobi T; Sandmann C; Juergensen L; Kmietczyk V; Malovrh E; Burghaus J; Rettel M; Stein F; Younesi FS; Friedrich UA; Mauz V; Backs J; Kramer G; Katus HA; Dieterich C; Völkers M, 2019. Monitoring Cell Type-Specific Gene Expression Using Ribosome Profiling In Vivo During Cardiac Hemodynamic Stress.  Circ Res.

Jakobi T; Dieterich C, 2019. Computational approaches for circular RNA analysis.  Wiley Interdiscip Rev RNA 10(3):e1528

Blackwood EA; Hofmann C; Santo Domingo M; Bilal AS; Sarakki A; Stauffer W; Arrieta A; Thuerauf DJ; Kolkhorst FW; Müller OJ; Jakobi T; Dieterich C; Katus HA; Doroudgar S; Glembotski CC, 2019. ATF6 Regulates Cardiac Hypertrophy by Transcriptional Induction of the mTORC1 Activator, Rheb.  Circ Res 124(1):79-93

Worpenberg L; Jakobi T; Dieterich C; Roignant JY, 2019. Identification of Methylated Transcripts Using the TRIBE Approach.  Methods Mol Biol 1870:89-106

Bischof LF; Haurat MF; Hoffmann L; Albersmeier A; Wolf J; Neu A; Pham TK; Albaum SP; Jakobi T; Schouten S; Neumann-Schaal M; Wright PC; Kalinowski J; Siebers B; Albers SV, 2018. Early Response of Sulfolobus acidocaldarius to Nutrient Limitation.  Front Microbiol 9:3201

Jakobi T; Uvarovskii A; Dieterich C, 2018. circtools - a one-stop software solution for circular RNA research.  Bioinformatics.

Jakobi T; Dieterich C, 2018. Deep Computational Circular RNA Analytics from RNA-seq Data.  Methods Mol Biol 1724:9-25

Jakobi T; Czaja-Hasse LF; Reinhardt R; Dieterich C, 2016. Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts.  Genomics Proteomics Bioinformatics 14(4):216-23

Langenkämper D; Jakobi T; Feld D; Jelonek L; Goesmann A; Nattkemper TW, 2016. Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations.  Front Genet 7:5

Morgner J; Ghatak S; Jakobi T; Dieterich C; Aumailley M; Wickström SA, 2015. Integrin-linked kinase regulates the niche of quiescent epidermal stem cells.  Nat Commun 6:8198

Jakobi T; Brinkrolf K; Tauch A; Noll T; Stoye J; Pühler A; Goesmann A, 2014. Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing.  J Biotechnol 190:64-75

Cox AJ; Bauer MJ; Jakobi T; Rosone G, 2012. Large-scale compression of genomic sequence databases with the Burrows-Wheeler transform.  Bioinformatics 28(11):1415-9

Hackl M; Jadhav V; Jakobi T; Rupp O; Brinkrolf K; Goesmann A; Pühler A; Noll T; Borth N; Grillari J, 2012. Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines.  J Biotechnol 158(3):151-5

Becker J; Timmermann C; Jakobi T; Rupp O; Szczepanowski R; Hackl M; Goesmann A; Tauch A; Borth N; Grillari J; Pühler A; Noll T; Brinkrolf K, 2011. Next-generation sequencing of the CHO cell transcriptome.  BMC Proc 5 Suppl 8:P6

Becker J; Hackl M; Rupp O; Jakobi T; Schneider J; Szczepanowski R; Bekel T; Borth N; Goesmann A; Grillari J; Kaltschmidt C; Noll T; Pühler A; Tauch A; Brinkrolf K, 2011. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing.  J Biotechnol 156(3):227-35

Blom J; Jakobi T; Doppmeier D; Jaenicke S; Kalinowski J; Stoye J; Goesmann A, 2011. Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.  Bioinformatics 27(10):1351-8

Hackl M; Jakobi T; Blom J; Doppmeier D; Brinkrolf K; Szczepanowski R; Bernhart SH; Höner Zu Siederdissen C; Bort JA; Wieser M; Kunert R; Jeffs S; Hofacker IL; Goesmann A; Pühler A; Borth N; Grillari J, 2011. Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering.  J Biotechnol 153(1-2):62-75

Henckel K; Runte KJ; Bekel T; Dondrup M; Jakobi T; Küster H; Goesmann A, 2009. TRUNCATULIX--a data warehouse for the legume community.  BMC Plant Biol 9:19

Publication list retrieved from NCBI using ImpactPubs

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